| apex |
Phylogenetic Methods for Multiple Gene Data |
| ape |
Analyses of Phylogenetics and Evolution |
| adegenet |
Exploratory Analysis of Genetic and Genomic Data |
| pegas |
Population and Evolutionary Genetics Analysis System |
| coalescentMCMC |
MCMC Algorithms for the Coalescent |
| mmod |
Modern Measures of Population Differentiation |
| poppr |
Genetic Analysis of Populations with Mixed Reproduction |
| strataG |
Summaries and Population Structure Analyses of Haplotypic and Genotypic Data |
| rmetasim |
An Individual-Based Population Genetic Simulation Environment |
| hierfstat |
Estimation and Tests of Hierarchical F-Statistics |
| pcadapt |
Principal Component Analysis for Outlier Detection |
| OutFLANK |
Fst outliers with trimming |
| phangorn |
Phylogenetic Analysis in R |
| phylobase |
Base Package for Phylogenetic Structures and Comparative Data |
| phytools |
Phylogenetic Tools for Comparative Biology (and Other Things) |
| BioStrings |
String objects representing biological sequences, and matching algorithms |
| qvalue |
Q-value estimation for false discovery rate control |