Package Title
apex Phylogenetic Methods for Multiple Gene Data
ape Analyses of Phylogenetics and Evolution
adegenet Exploratory Analysis of Genetic and Genomic Data
pegas Population and Evolutionary Genetics Analysis System
coalescentMCMC MCMC Algorithms for the Coalescent
mmod Modern Measures of Population Differentiation
poppr Genetic Analysis of Populations with Mixed Reproduction
strataG Summaries and Population Structure Analyses of Haplotypic and Genotypic Data
rmetasim An Individual-Based Population Genetic Simulation Environment
hierfstat Estimation and Tests of Hierarchical F-Statistics
pcadapt Principal Component Analysis for Outlier Detection
OutFLANK Fst outliers with trimming
phangorn Phylogenetic Analysis in R
phylobase Base Package for Phylogenetic Structures and Comparative Data
phytools Phylogenetic Tools for Comparative Biology (and Other Things)
BioStrings String objects representing biological sequences, and matching algorithms
qvalue Q-value estimation for false discovery rate control