Population Genetics in R
Users
Getting Started
For microsatellite data:
Basic statistics
Population differentiation
Comparing genetic diversity using mixed models
For SNP data:
Basic statistics
Population differentiation
Genetic distance (individual-based)
Signals of selection
Spatial outlier detection
Detecting multilocus adaptation using redundancy analysis
For sequence data:
Population differentiation
Package Developers
Population genetic packages in R
Population genetic data types in R
Tutorials for developing R packages
Development Resources (external):
Hadley Wickham's guide for creating R packages
Jeff Leek's R package development
S4 Classes in detail
S3 Classes in detail
A not so short introduction to S4
Contribute!
Contribution guidelines
Contributing with git2r
Source repository
Useful Links
Getting started using R
Software
Reference
If you are new to R, here are some resources that can get you started:
Software
Install R
Install RStudio
swirl: learn R interactively
Reference
A few words for R beginners
R Reference Card
R tutorials CRAN page
Comprehensive list of resources for getting started in R